Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.
Identifieur interne : 000046 ( Main/Exploration ); précédent : 000045; suivant : 000047Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.
Auteurs : Ilga Porth [Canada] ; Jaroslav Klápste ; Athena D. Mckown ; Jonathan La Mantia ; Richard C. Hamelin ; Oleksandr Skyba ; Faride Unda ; Michael C. Friedmann ; Quentin C B. Cronk ; Jürgen Ehlting ; Robert D. Guy ; Shawn D. Mansfield ; Yousry A. El-Kassaby ; Carl J. DouglasSource :
- Plant physiology [ 1532-2548 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Déséquilibre de liaison, Polymorphisme de nucléotide simple, Populus, Protéines végétales.
- métabolisme : Protéines végétales.
- Pléiotropie, Techniques génétiques.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Linkage Disequilibrium, Polymorphism, Single Nucleotide, Populus.
- chemical , metabolism : Plant Proteins.
- Genetic Pleiotropy, Genetic Techniques.
Abstract
In plants, genes may sustain extensive pleiotropic functional properties by individually affecting multiple, distinct traits. We discuss results from three genome-wide association studies of approximately 400 natural poplar (Populus trichocarpa) accessions phenotyped for 60 ecological/biomass, wood quality, and rust fungus resistance traits. Single-nucleotide polymorphisms (SNPs) in the poplar ortholog of the class III homeodomain-leucine zipper transcription factor gene REVOLUTA (PtREV) were significantly associated with three specific traits. Based on SNP associations with fungal resistance, leaf drop, and cellulose content, the PtREV gene contains three potential regulatory sites within noncoding regions at the gene's 3' end, where alternative splicing and messenger RNA processing actively occur. The polymorphisms in this region associated with leaf abscission and cellulose content are suggested to represent more recent variants, whereas the SNP associated with leaf rust resistance may be more ancient, consistent with REV's primary role in auxin signaling and its functional evolution in supporting fundamental processes of vascular plant development.
DOI: 10.1104/pp.113.228783
PubMed: 24309192
PubMed Central: PMC3912088
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Mckown</name></author><author><name sortKey="La Mantia, Jonathan" sort="La Mantia, Jonathan" uniqKey="La Mantia J" first="Jonathan" last="La Mantia">Jonathan La Mantia</name></author><author><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C" last="Hamelin">Richard C. Hamelin</name></author><author><name sortKey="Skyba, Oleksandr" sort="Skyba, Oleksandr" uniqKey="Skyba O" first="Oleksandr" last="Skyba">Oleksandr Skyba</name></author><author><name sortKey="Unda, Faride" sort="Unda, Faride" uniqKey="Unda F" first="Faride" last="Unda">Faride Unda</name></author><author><name sortKey="Friedmann, Michael C" sort="Friedmann, Michael C" uniqKey="Friedmann M" first="Michael C" last="Friedmann">Michael C. Friedmann</name></author><author><name sortKey="Cronk, Quentin C B" sort="Cronk, Quentin C B" uniqKey="Cronk Q" first="Quentin C B" last="Cronk">Quentin C B. Cronk</name></author><author><name sortKey="Ehlting, Jurgen" sort="Ehlting, Jurgen" uniqKey="Ehlting J" first="Jürgen" last="Ehlting">Jürgen Ehlting</name></author><author><name sortKey="Guy, Robert D" sort="Guy, Robert D" uniqKey="Guy R" first="Robert D" last="Guy">Robert D. Guy</name></author><author><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name></author><author><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A" last="El-Kassaby">Yousry A. El-Kassaby</name></author><author><name sortKey="Douglas, Carl J" sort="Douglas, Carl J" uniqKey="Douglas C" first="Carl J" last="Douglas">Carl J. Douglas</name></author></analytic><series><title level="j">Plant physiology</title><idno type="eISSN">1532-2548</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Genetic Pleiotropy (MeSH)</term><term>Genetic Techniques (MeSH)</term><term>Linkage Disequilibrium (genetics)</term><term>Plant Proteins (genetics)</term><term>Plant Proteins (metabolism)</term><term>Polymorphism, Single Nucleotide (genetics)</term><term>Populus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Déséquilibre de liaison (génétique)</term><term>Pléiotropie (MeSH)</term><term>Polymorphisme de nucléotide simple (génétique)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Protéines végétales (métabolisme)</term><term>Techniques génétiques (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Linkage Disequilibrium</term><term>Polymorphism, Single Nucleotide</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Déséquilibre de liaison</term><term>Polymorphisme de nucléotide simple</term><term>Populus</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Pleiotropy</term><term>Genetic Techniques</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Pléiotropie</term><term>Techniques génétiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In plants, genes may sustain extensive pleiotropic functional properties by individually affecting multiple, distinct traits. We discuss results from three genome-wide association studies of approximately 400 natural poplar (Populus trichocarpa) accessions phenotyped for 60 ecological/biomass, wood quality, and rust fungus resistance traits. Single-nucleotide polymorphisms (SNPs) in the poplar ortholog of the class III homeodomain-leucine zipper transcription factor gene REVOLUTA (PtREV) were significantly associated with three specific traits. Based on SNP associations with fungal resistance, leaf drop, and cellulose content, the PtREV gene contains three potential regulatory sites within noncoding regions at the gene's 3' end, where alternative splicing and messenger RNA processing actively occur. The polymorphisms in this region associated with leaf abscission and cellulose content are suggested to represent more recent variants, whereas the SNP associated with leaf rust resistance may be more ancient, consistent with REV's primary role in auxin signaling and its functional evolution in supporting fundamental processes of vascular plant development. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24309192</PMID><DateCompleted><Year>2014</Year><Month>10</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-2548</ISSN><JournalIssue CitedMedium="Internet"><Volume>164</Volume><Issue>2</Issue><PubDate><Year>2014</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Plant physiology</Title><ISOAbbreviation>Plant Physiol</ISOAbbreviation></Journal><ArticleTitle>Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.</ArticleTitle><Pagination><MedlinePgn>548-54</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1104/pp.113.228783</ELocationID><Abstract><AbstractText>In plants, genes may sustain extensive pleiotropic functional properties by individually affecting multiple, distinct traits. We discuss results from three genome-wide association studies of approximately 400 natural poplar (Populus trichocarpa) accessions phenotyped for 60 ecological/biomass, wood quality, and rust fungus resistance traits. Single-nucleotide polymorphisms (SNPs) in the poplar ortholog of the class III homeodomain-leucine zipper transcription factor gene REVOLUTA (PtREV) were significantly associated with three specific traits. Based on SNP associations with fungal resistance, leaf drop, and cellulose content, the PtREV gene contains three potential regulatory sites within noncoding regions at the gene's 3' end, where alternative splicing and messenger RNA processing actively occur. The polymorphisms in this region associated with leaf abscission and cellulose content are suggested to represent more recent variants, whereas the SNP associated with leaf rust resistance may be more ancient, consistent with REV's primary role in auxin signaling and its functional evolution in supporting fundamental processes of vascular plant development. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Porth</LastName><ForeName>Ilga</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Department of Wood Science , University of British Columbia, Vancouver, British Columbia, Canada BC V6T 1Z4.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Klápste</LastName><ForeName>Jaroslav</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>McKown</LastName><ForeName>Athena D</ForeName><Initials>AD</Initials></Author><Author ValidYN="Y"><LastName>La Mantia</LastName><ForeName>Jonathan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Hamelin</LastName><ForeName>Richard C</ForeName><Initials>RC</Initials></Author><Author ValidYN="Y"><LastName>Skyba</LastName><ForeName>Oleksandr</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Unda</LastName><ForeName>Faride</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Friedmann</LastName><ForeName>Michael C</ForeName><Initials>MC</Initials></Author><Author ValidYN="Y"><LastName>Cronk</LastName><ForeName>Quentin C B</ForeName><Initials>QC</Initials></Author><Author ValidYN="Y"><LastName>Ehlting</LastName><ForeName>Jürgen</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Guy</LastName><ForeName>Robert D</ForeName><Initials>RD</Initials></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Shawn D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>El-Kassaby</LastName><ForeName>Yousry A</ForeName><Initials>YA</Initials></Author><Author ValidYN="Y"><LastName>Douglas</LastName><ForeName>Carl J</ForeName><Initials>CJ</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>12</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Physiol</MedlineTA><NlmUniqueID>0401224</NlmUniqueID><ISSNLinking>0032-0889</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D058685" MajorTopicYN="Y">Genetic Pleiotropy</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005821" MajorTopicYN="Y">Genetic Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015810" MajorTopicYN="N">Linkage Disequilibrium</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" 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Cronk</name><name sortKey="Douglas, Carl J" sort="Douglas, Carl J" uniqKey="Douglas C" first="Carl J" last="Douglas">Carl J. Douglas</name><name sortKey="Ehlting, Jurgen" sort="Ehlting, Jurgen" uniqKey="Ehlting J" first="Jürgen" last="Ehlting">Jürgen Ehlting</name><name sortKey="El Kassaby, Yousry A" sort="El Kassaby, Yousry A" uniqKey="El Kassaby Y" first="Yousry A" last="El-Kassaby">Yousry A. El-Kassaby</name><name sortKey="Friedmann, Michael C" sort="Friedmann, Michael C" uniqKey="Friedmann M" first="Michael C" last="Friedmann">Michael C. Friedmann</name><name sortKey="Guy, Robert D" sort="Guy, Robert D" uniqKey="Guy R" first="Robert D" last="Guy">Robert D. Guy</name><name sortKey="Hamelin, Richard C" sort="Hamelin, Richard C" uniqKey="Hamelin R" first="Richard C" last="Hamelin">Richard C. Hamelin</name><name sortKey="Klapste, Jaroslav" sort="Klapste, Jaroslav" uniqKey="Klapste J" first="Jaroslav" last="Klápste">Jaroslav Klápste</name><name sortKey="La Mantia, Jonathan" sort="La Mantia, Jonathan" uniqKey="La Mantia J" first="Jonathan" last="La Mantia">Jonathan La Mantia</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name><name sortKey="Mckown, Athena D" sort="Mckown, Athena D" uniqKey="Mckown A" first="Athena D" last="Mckown">Athena D. Mckown</name><name sortKey="Skyba, Oleksandr" sort="Skyba, Oleksandr" uniqKey="Skyba O" first="Oleksandr" last="Skyba">Oleksandr Skyba</name><name sortKey="Unda, Faride" sort="Unda, Faride" uniqKey="Unda F" first="Faride" last="Unda">Faride Unda</name></noCountry><country name="Canada"><region name="Colombie-Britannique "><name sortKey="Porth, Ilga" sort="Porth, Ilga" uniqKey="Porth I" first="Ilga" last="Porth">Ilga Porth</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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